Index

A

add_input() (sisyphus.job.Job method) add_target() (sisyphus.graph.SISGraph method)

ALIAS_AND_OUTPUT_SUBDIR (in module sisyphus.global_settings) ALIAS_DIR (in module sisyphus.global_settings) AUTO_SET_JOB_INIT_ATTRIBUTES (in module sisyphus.global_settings)

B

BlockedWorkflow

bundle_to_str() (in module sisyphus.toolkit)

C

cached_engine() (in module sisyphus.global_settings) (in module sisyphus.toolkit) call (sisyphus.localengine.TaskQueueInstance attribute) check_engine_limits() (in module sisyphus.global_settings) cleaner() (in module sisyphus.toolkit)

CLEANUP_ENVIRONMENT (in module sisyphus.global_settings) CLEAR_ERROR (in module sisyphus.global_settings) compare_graph() (in module sisyphus.toolkit) CONFIG_FUNCTION_DEFAULT (in module sisyphus.global_settings) CONFIG_PATH (in module sisyphus.global_settings)

D

DEFAULT_ENVIRONMENT_KEEP (in module sisyphus.global_settings)

DEFAULT_ENVIRONMENT_SET (in module sisyphus.global_settings) dump() (in module sisyphus.toolkit)

E

engine() (in module sisyphus.global_settings) EngineBase (class in sisyphus.engine)

EngineSelector (class in sisyphus.engine) export_graph() (in module sisyphus.toolkit)

F

file_caching() (in module sisyphus.global_settings) FILESYSTEM_CACHE_TIME (in module sisyphus.global_settings)

find() (sisyphus.graph.SISGraph method) for_all_engines() (sisyphus.engine.EngineSelector method) for_all_nodes() (sisyphus.graph.SISGraph method)

G

get_job_from_path() (sisyphus.graph.SISGraph method) get_job_used_resources() (sisyphus.engine.EngineBase method) (sisyphus.engine.EngineSelector method) get_jobs_by_status() (sisyphus.graph.SISGraph method) get_logpath() (sisyphus.load_sharing_facility_engine.LoadSharingFacilityEngine static method) (sisyphus.son_of_grid_engine.SonOfGridEngine method) get_rqmt() (sisyphus.engine.EngineBase method)

get_task_id() (sisyphus.engine.EngineBase static method) (sisyphus.load_sharing_facility_engine.LoadSharingFacilityEngine method) (sisyphus.localengine.LocalEngine method) (sisyphus.son_of_grid_engine.SonOfGridEngine static method) get_used_engine() (sisyphus.engine.EngineSelector method) get_used_engine_by_rqmt() (sisyphus.engine.EngineSelector method) GRAPH_WORKER (in module sisyphus.global_settings)

H

hash() (sisyphus.job.Job class method)

I

import_work_directory() (in module sisyphus.toolkit) info() (sisyphus.job.Job method)

init_worker() (sisyphus.engine.EngineBase method) (sisyphus.son_of_grid_engine.SonOfGridEngine method) input_path() (in module sisyphus.toolkit)

J

Job (class in sisyphus.job) JOB_AUTO_CLEANUP (in module sisyphus.global_settings) JOB_CLEANER_INTERVAL (in module sisyphus.global_settings) JOB_CLEANER_WORKER (in module sisyphus.global_settings) JOB_CLEANUP_KEEP_WORK (in module sisyphus.global_settings) JOB_DEFAULT_KEEP_VALUE (in module sisyphus.global_settings) job_id (sisyphus.load_sharing_facility_engine.TaskInfo attribute) (sisyphus.son_of_grid_engine.TaskInfo attribute)

job_id() (sisyphus.job.Job method) job_info() (in module sisyphus.toolkit) JOB_MAX_NUMBER_OF_LOCKS (in module sisyphus.global_settings) job_state() (sisyphus.engine.EngineBase method) jobs() (sisyphus.graph.SISGraph method) jobs_sorted() (sisyphus.graph.SISGraph method)

K

keep_value() (sisyphus.job.Job method)

L

load_file() (in module sisyphus.toolkit) load_job() (in module sisyphus.toolkit)

LoadSharingFacilityEngine (class in sisyphus.load_sharing_facility_engine) LocalEngine (class in sisyphus.localengine) logpath (sisyphus.localengine.TaskQueueInstance attribute)

M

MANAGER_SUBMIT_WORKER (in module sisyphus.global_settings) MAX_SUBMIT_RETRIES (in module sisyphus.global_settings)

migrate_graph() (in module sisyphus.toolkit) mktemp (class in sisyphus.toolkit)

N

name (sisyphus.localengine.TaskQueueInstance attribute)

O

Object (class in sisyphus.toolkit) output (sisyphus.graph.SISGraph attribute)

OUTPUT_DIR (in module sisyphus.global_settings) output_path() (sisyphus.job.Job method) output_var() (sisyphus.job.Job method)

P

path_available() (sisyphus.job.Job method) PLOGGING_INTERVAL (in module sisyphus.global_settings) PLOGGING_MIN_CHANGE (in module sisyphus.global_settings) PLOGGING_QUIET (in module sisyphus.global_settings)

PLOGGING_UPDATE_FILE_PERIOD (in module sisyphus.global_settings) PRINT_ERROR (in module sisyphus.global_settings) PRINT_ERROR_LINES (in module sisyphus.global_settings) PRINT_ERROR_TASKS (in module sisyphus.global_settings)

Q

queue_state() (sisyphus.load_sharing_facility_engine.LoadSharingFacilityEngine method) (sisyphus.son_of_grid_engine.SonOfGridEngine method)

R

RECIPE_PATH (in module sisyphus.global_settings) register_output() (in module sisyphus.toolkit) reload_config() (in module sisyphus.toolkit) reload_module() (in module sisyphus.toolkit) reload_recipes() (in module sisyphus.toolkit) RelPath (class in sisyphus.toolkit)

remove_job_and_descendants() (in module sisyphus.toolkit) replace_graph_objects() (in module sisyphus.toolkit) rqmt (sisyphus.localengine.TaskQueueInstance attribute) run() (in module sisyphus.toolkit) run_job() (in module sisyphus.toolkit) run_task() (in module sisyphus.localengine)

S

set_attrs() (sisyphus.job.Job method) set_default() (sisyphus.job.Job method) set_job_targets() (sisyphus.graph.SISGraph method) set_keep_value() (sisyphus.job.Job method) set_rqmt() (sisyphus.job.Job method) setup_job_directory() (in module sisyphus.toolkit) setup_path() (in module sisyphus.toolkit) setup_script_mode() (in module sisyphus.toolkit) sh() (sisyphus.job.Job method) SHOW_JOB_TARGETS (in module sisyphus.global_settings) SIS_COMMAND (in module sisyphus.global_settings) SIS_HASH() (in module sisyphus.global_settings) SISGraph (class in sisyphus.graph) sisyphus.engine (module) sisyphus.global_settings (module) sisyphus.load_sharing_facility_engine (module) sisyphus.localengine (module) sisyphus.son_of_grid_engine (module) sisyphus.toolkit (module)

SonOfGridEngine (class in sisyphus.son_of_grid_engine) start_engine() (sisyphus.load_sharing_facility_engine.LoadSharingFacilityEngine method) (sisyphus.son_of_grid_engine.SonOfGridEngine method) start_manager() (in module sisyphus.toolkit) start_task() (sisyphus.localengine.LocalEngine method) state (sisyphus.load_sharing_facility_engine.TaskInfo attribute) (sisyphus.son_of_grid_engine.TaskInfo attribute) stop_engine() (sisyphus.engine.EngineSelector method) (sisyphus.load_sharing_facility_engine.LoadSharingFacilityEngine method) (sisyphus.son_of_grid_engine.SonOfGridEngine method) submit() (sisyphus.engine.EngineBase method) submit_call() (sisyphus.engine.EngineBase method) (sisyphus.engine.EngineSelector method) (sisyphus.load_sharing_facility_engine.LoadSharingFacilityEngine method) (sisyphus.localengine.LocalEngine method) (sisyphus.son_of_grid_engine.SonOfGridEngine method) submit_helper() (sisyphus.son_of_grid_engine.SonOfGridEngine method) sync_object (class in sisyphus.localengine) system_call() (sisyphus.son_of_grid_engine.SonOfGridEngine method)

T

targets_dict (sisyphus.graph.SISGraph attribute) Task (class in sisyphus.task) task_id (sisyphus.load_sharing_facility_engine.TaskInfo attribute) (sisyphus.localengine.TaskQueueInstance attribute) (sisyphus.son_of_grid_engine.TaskInfo attribute) task_name (sisyphus.localengine.TaskQueueInstance attribute) task_state() (sisyphus.engine.EngineSelector method) (sisyphus.load_sharing_facility_engine.LoadSharingFacilityEngine method) (sisyphus.son_of_grid_engine.SonOfGridEngine method)

TaskInfo (class in sisyphus.load_sharing_facility_engine) (class in sisyphus.son_of_grid_engine) TaskQueueInstance (class in sisyphus.localengine) tasks() (sisyphus.job.Job method) TMP_PREFIX (in module sisyphus.global_settings) try_to_multiply() (in module sisyphus.load_sharing_facility_engine) (in module sisyphus.son_of_grid_engine)

U

uncached_path() (in module sisyphus.toolkit) update() (sisyphus.job.Job method) update_engine_rqmt() (in module sisyphus.global_settings) update_global_settings_from_env() (in module sisyphus.global_settings) update_global_settings_from_file() (in module sisyphus.global_settings)

update_global_settings_from_text() (in module sisyphus.global_settings) update_nodes() (sisyphus.graph.SISGraph method) update_rqmt() (sisyphus.job.Job method) USE_SIGNAL_HANDLERS (in module sisyphus.global_settings) USE_VERBOSE_TRACEBACK (in module sisyphus.global_settings)

V

VERBOSE_TRACEBACK_TYPE (in module sisyphus.global_settings)

VIS_ABSOLUTE_MERGE_THRESHOLD (in module sisyphus.global_settings) VIS_RELATIVE_MERGE_THRESHOLD (in module sisyphus.global_settings)

W

WAIT_PERIOD_BETWEEN_CHECKS (in module sisyphus.global_settings) WAIT_PERIOD_CACHE (in module sisyphus.global_settings) WAIT_PERIOD_HTTP_RETRY_BIND (in module sisyphus.global_settings) WAIT_PERIOD_JOB_CLEANUP (in module sisyphus.global_settings)

WAIT_PERIOD_JOB_FS_SYNC (in module sisyphus.global_settings) WAIT_PERIOD_MTIME_OF_INPUTS (in module sisyphus.global_settings) WAIT_PERIOD_QSTAT_PARSING (in module sisyphus.global_settings) WAIT_PERIOD_SSH_TIMEOUT (in module sisyphus.global_settings) WORK_DIR (in module sisyphus.global_settings)

Z

zipped() (in module sisyphus.toolkit)